Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1248PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cau:Caur_2439 ABC transporter related. (604 aa)    
Predicted Functional Partners:
Ccel_1247
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_0829 ABC transporter, ATP-binding protein.
 
    
0.808
Ccel_1515
Hypothetical protein; KEGG: bba:Bd2582 cell wall surface anchor family protein.
  
     0.655
Ccel_1519
KEGG: predicted protein.
  
     0.654
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
     0.653
Ccel_1396
KEGG: ote:Oter_1909 hypothetical protein.
  
     0.652
Ccel_2515
KEGG: plu:plu2412 hypothetical protein.
 
   
 0.640
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.604
Ccel_2510
PFAM: protein of unknown function DUF201; KEGG: saq:Sare_0485 hypothetical protein.
  
   
 0.604
Ccel_2502
KEGG: cbe:Cbei_0745 hypothetical protein.
  
   
 0.599
Ccel_1937
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0243 copper amine oxidase-like protein.
  
     0.594
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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