Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1253PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0727 polysaccharide ABC transporter permease. (300 aa)    
Predicted Functional Partners:
Ccel_1254
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1066 hypothetical protein.
 
 
 0.987
Ccel_0144
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpu:BPUM_2666 ABC transporter ATP-binding protein.
 
 
 0.955
Ccel_0152
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_3208 binding-protein-dependent transport systems inner membrane component.
 
 
 0.955
Ccel_1015
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB3208 hypothetical protein.
 
 
 0.955
Ccel_2457
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1548 binding-protein-dependent transport systems inner membrane component.
 
 
 0.955
Ccel_0947
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU07120 transmembrane lipoprotein.
 
 
 0.954
Ccel_1252
PFAM: extracellular solute-binding protein family 1; KEGG: gtn:GTNG_1773 peripheral protein.
 
  
 0.864
Ccel_1016
PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_2193 extracellular solute-binding protein.
 
  
 0.778
Ccel_0150
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH2111 hypothetical protein.
 
  
 0.663
Ccel_2110
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1101 binding-protein-dependent transport systems inner membrane component.
 
  
 0.632
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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