Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1256KEGG: bcl:ABC3370 hypothetical protein. (84 aa)    
Predicted Functional Partners:
Ccel_1257
PFAM: glycoside hydrolase family 43; KEGG: fjo:Fjoh_3875 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 43 family.
       0.631
Ccel_1255
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bcl:ABC3371 alpha-L-arabinofuranosidase.
       0.613
Ccel_1258
PFAM: glycoside hydrolase family 8; KEGG: bha:BH2105 xylanase Y.
       0.582
Ccel_1259
PFAM: glycoside hydrolase family 39; KEGG: csc:Csac_2409 xylan 1,4-beta-xylosidase.
       0.445
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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