STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1261KEGG: ote:Oter_3211 hypothetical protein. (732 aa)    
Predicted Functional Partners:
Ccel_1252
PFAM: extracellular solute-binding protein family 1; KEGG: gtn:GTNG_1773 peripheral protein.
 
   0.786
Ccel_3463
Carbohydrate-binding family 9; PFAM: Ig domain protein group 2 domain protein; Carbohydrate-binding family 9; KEGG: cth:Cthe_0912 glycoside hydrolase family protein.
  
     0.699
Ccel_1262
PFAM: protein of unknown function DUF303 acetylesterase putative; glycoside hydrolase family 2 sugar binding; KEGG: csc:Csac_0206 protein of unknown function DUF303, acetylesterase putative; Belongs to the glycosyl hydrolase 2 family.
       0.686
Ccel_2909
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein.
  
 
 0.678
Ccel_0150
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH2111 hypothetical protein.
  
   0.622
Ccel_1260
PFAM: putative esterase; phospholipase/Carboxylesterase; KEGG: csc:Csac_2407 putative esterase.
       0.608
Ccel_2669
PFAM: Carbohydrate-binding family 9; KEGG: cth:Cthe_0912 glycoside hydrolase family protein.
  
     0.602
Ccel_3350
PFAM: extracellular solute-binding protein family 1; KEGG: esi:Exig_0586 extracellular solute-binding protein.
  
   0.554
Ccel_0145
PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_1918 extracellular solute-binding protein.
  
   0.551
Ccel_1251
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: hypothetical protein.
 
     0.536
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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