Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1304KEGG: mla:Mlab_1595 hypothetical protein. (224 aa)    
Predicted Functional Partners:
Ccel_1305
KEGG: cpf:CPF_1142 hypothetical protein.
 
    0.973
Ccel_1303
PFAM: Spore coat protein CotH; KEGG: mla:Mlab_1597 hypothetical protein.
 
     0.949
Ccel_0250
KEGG: swo:Swol_2179 hypothetical protein.
 
    0.898
Ccel_0251
PFAM: Spore coat protein CotH; KEGG: cpy:Cphy_0703 spore coat protein CotH.
 
     0.788
Ccel_1306
PFAM: phosphoesterase PA-phosphatase related; KEGG: cno:NT01CX_1615 PAP2 family protein, putative.
   
   0.702
Ccel_0293
PFAM: MgtC/SapB transporter; KEGG: cth:Cthe_1919 MgtC/SapB transporter.
 
    0.629
Ccel_1302
Putative transcriptional regulator, TetR family; KEGG: ckl:CKL_2387 transcriptional regulator.
       0.545
Ccel_1307
PFAM: glycosyl transferase family 2; KEGG: cth:Cthe_3094 glycosyl transferase family protein.
       0.407
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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