Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1306PFAM: phosphoesterase PA-phosphatase related; KEGG: cno:NT01CX_1615 PAP2 family protein, putative. (225 aa)    
Predicted Functional Partners:
Ccel_1304
KEGG: mla:Mlab_1595 hypothetical protein.
   
   0.702
Ccel_1305
KEGG: cpf:CPF_1142 hypothetical protein.
       0.668
Ccel_2331
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bsu:BSU17180 polyketide synthase of type I.
 
 0.644
Ccel_1303
PFAM: Spore coat protein CotH; KEGG: mla:Mlab_1597 hypothetical protein.
       0.607
Ccel_1308
KEGG: btk:BT9727_5109 hypothetical protein.
  
  
 0.530
Ccel_3348
PFAM: phosphoesterase PA-phosphatase related; KEGG: cbt:CLH_3231 PAP2 family protein.
 
   
 0.523
Ccel_1307
PFAM: glycosyl transferase family 2; KEGG: cth:Cthe_3094 glycosyl transferase family protein.
     
 0.516
Ccel_1302
Putative transcriptional regulator, TetR family; KEGG: ckl:CKL_2387 transcriptional regulator.
       0.438
rplF
Ribosomal protein L6 signature 1; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.431
Ccel_1555
PFAM: phosphoesterase PA-phosphatase related; KEGG: tpd:Teth39_0213 phosphoesterase, PA-phosphatase related.
 
   
 0.424
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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