STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1371KEGG: cth:Cthe_1230 helix-hairpin-helix repeat-containing competence protein ComEA; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; Competence protein ComEA helix-hairpin-helix region; SMART: Helix-hairpin-helix DNA-binding class 1. (253 aa)    
Predicted Functional Partners:
Ccel_1955
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: cth:Cthe_0606 DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.797
Ccel_2412
PFAM: type II secretion system protein; KEGG: amt:Amet_3480 type II secretion system protein.
  
  
 0.784
Ccel_2414
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: tte:TTE1262 pili biogenesis protein PilB-like ATPase.
  
  
 0.761
Ccel_2411
KEGG: tte:TTE1265 hypothetical protein.
  
  
 0.606
Ccel_2410
PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: cth:Cthe_0852 Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A.
   
  
 0.590
Ccel_2779
PFAM: peptidase A24A prepilin type IV; KEGG: hmo:HM1_0584 type IV prepilin-like proteins leader peptide-processing enzyme.
   
  
 0.590
cinA
Competence/damage-inducible protein CinA; TIGRFAM: molybdenum cofactor synthesis domain protein; competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cth:Cthe_1052 competence/damage-inducible protein CinA.
     
 0.577
Ccel_0090
PFAM: phosphoribosyltransferase; KEGG: cth:Cthe_2248 phosphoribosyltransferase.
  
  
 0.522
Ccel_1370
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: cth:Cthe_1231 serine-type D-Ala-D-Ala carboxypeptidase.
     
 0.463
Ccel_2478
PFAM: Forkhead-associated protein; KEGG: cbf:CLI_3569 FHA domain-containing protein.
 
     0.443
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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