Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
Ccel_1406PFAM: basic membrane lipoprotein; KEGG: cno:NT01CX_0401 Bmp family membrane protein. (386 aa)    
Predicted Functional Partners:
Ccel_1407
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0400 ABC transporter, ATP-binding protein.
 
 
 0.989
Ccel_1409
PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0398 branched chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.984
Ccel_1408
PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0399 branched chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.982
Ccel_1076
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbt:CLH_3250 ribose import ATP-binding protein RbsA.
 
 
 0.969
Ccel_1078
PFAM: inner-membrane translocator; KEGG: cbt:CLH_3248 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.968
Ccel_1077
PFAM: inner-membrane translocator; KEGG: cbt:CLH_3249 sugar ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.963
Ccel_1075
PFAM: basic membrane lipoprotein; KEGG: cbt:CLH_3251 putative basic membrane lipoprotein.
  
  
  0.926
xpt
Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
 
   
 0.701
Ccel_2063
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
   
    0.435
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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