STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1406PFAM: basic membrane lipoprotein; KEGG: cno:NT01CX_0401 Bmp family membrane protein. (386 aa)    
Predicted Functional Partners:
Ccel_1407
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0400 ABC transporter, ATP-binding protein.
 
 
 0.987
Ccel_1409
PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0398 branched chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.984
Ccel_1408
PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0399 branched chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.983
Ccel_1078
PFAM: inner-membrane translocator; KEGG: cbt:CLH_3248 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.967
Ccel_1076
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbt:CLH_3250 ribose import ATP-binding protein RbsA.
 
 
 0.966
Ccel_1077
PFAM: inner-membrane translocator; KEGG: cbt:CLH_3249 sugar ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.965
Ccel_1075
PFAM: basic membrane lipoprotein; KEGG: cbt:CLH_3251 putative basic membrane lipoprotein.
  
  
  0.926
xpt
Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
 
   
 0.715
atpE
ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
      
 0.519
rpsP
PFAM: ribosomal protein S16; KEGG: cth:Cthe_0769 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
      
 0.519
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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