STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1449PFAM: Patatin; KEGG: cth:Cthe_1382 patatin. (361 aa)    
Predicted Functional Partners:
Ccel_0517
KEGG: cbh:CLC_1710 hypothetical protein.
  
     0.620
Ccel_1448
KEGG: cth:Cthe_1383 tetratricopeptide TPR_2.
 
   
 0.606
Ccel_1955
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: cth:Cthe_0606 DNA internalization-related competence protein ComEC/Rec2.
     
 0.550
tlp
TIGRFAM: small, acid-soluble spore protein tlp; KEGG: cbe:Cbei_4610 small acid-soluble spore protein Tlp; Belongs to the Tlp family.
  
     0.514
Ccel_1420
KEGG: bha:BH1410 hypothetical protein.
  
    0.506
Ccel_2738
PFAM: TRAG family protein; KEGG: hmo:HM1_0622 TraG/TraD family protein, putative.
    
   0.493
Ccel_3153
PFAM: TRAG family protein; KEGG: aoe:Clos_1912 TraG family protein.
    
   0.493
Ccel_1450
TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cth:Cthe_1381 threonine synthase.
       0.489
Ccel_0804
KEGG: cth:Cthe_2732 hypothetical protein.
  
     0.473
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
    0.466
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.