Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1492KEGG: cau:Caur_2163 hypothetical protein. (1343 aa)    
Predicted Functional Partners:
Ccel_1491
PFAM: type 3a cellulose-binding domain protein; Hyalin; KEGG: LOC587453; similar to hyalin.
 
     0.848
Ccel_1515
Hypothetical protein; KEGG: bba:Bd2582 cell wall surface anchor family protein.
  
     0.742
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
     0.742
Ccel_1519
KEGG: predicted protein.
  
     0.740
Ccel_1493
PFAM: Ankyrin; KEGG: ankyrin repeat protein, putative.
       0.723
Ccel_1514
TIGRFAM: phage tail protein; KEGG: npu:Npun_F1414 phage tail protein.
  
     0.718
Ccel_1500
KEGG: mag:amb1882 hypothetical protein.
  
     0.717
Ccel_0736
PFAM: cellulosome protein dockerin type I; KEGG: cac:CAC0918 non-processive endoglucanase.
  
     0.690
Ccel_2442
PFAM: cellulosome protein dockerin type I; KEGG: gvi:gll3705 unknown protein.
  
     0.674
Ccel_1512
KEGG: noc:Noc_1865 hypothetical protein.
  
     0.672
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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