Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_1502TIGRFAM: conserved hypothetical protein; KEGG: gsu:GSU0976 hypothetical protein. (147 aa)    
Predicted Functional Partners:
Ccel_1501
PFAM: tail sheath protein; KEGG: sgr:SGR_2066 putative phage tail sheath protein.
 
 
 0.987
Ccel_1511
PFAM: GPW/gp25 family protein; KEGG: gsu:GSU0986 tail lysozyme, putative.
 
 
 0.961
Ccel_1507
KEGG: mag:amb1890 LysM domain-containing protein.
 
   0.952
Ccel_1508
Phage protein D; KEGG: mag:amb1891 phage protein D.
 
 
 
 0.951
Ccel_1512
KEGG: noc:Noc_1865 hypothetical protein.
 
 
 
 0.938
Ccel_1513
KEGG: npu:Npun_F1413 hypothetical protein.
 
 
 
 0.934
Ccel_1503
KEGG: gsu:GSU0977 hypothetical protein.
 
    0.909
Ccel_1509
PFAM: Rhs element Vgr protein; KEGG: gsu:GSU0983 hypothetical protein.
 
  
 0.892
Ccel_1500
KEGG: mag:amb1882 hypothetical protein.
 
     0.881
Ccel_1514
TIGRFAM: phage tail protein; KEGG: npu:Npun_F1414 phage tail protein.
 
 
   0.880
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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