Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1503KEGG: gsu:GSU0977 hypothetical protein. (151 aa)    
Predicted Functional Partners:
Ccel_1505
TIGRFAM: conserved hypothetical protein; KEGG: gsu:GSU0979 hypothetical protein.
 
    0.922
Ccel_1507
KEGG: mag:amb1890 LysM domain-containing protein.
 
    0.910
Ccel_1502
TIGRFAM: conserved hypothetical protein; KEGG: gsu:GSU0976 hypothetical protein.
 
    0.909
Ccel_1508
Phage protein D; KEGG: mag:amb1891 phage protein D.
 
     0.907
Ccel_1509
PFAM: Rhs element Vgr protein; KEGG: gsu:GSU0983 hypothetical protein.
 
     0.907
Ccel_1501
PFAM: tail sheath protein; KEGG: sgr:SGR_2066 putative phage tail sheath protein.
 
  
 0.899
Ccel_1511
PFAM: GPW/gp25 family protein; KEGG: gsu:GSU0986 tail lysozyme, putative.
 
   
 0.876
Ccel_1512
KEGG: noc:Noc_1865 hypothetical protein.
 
     0.865
Ccel_1510
PFAM: PAAR repeat-containing protein; KEGG: scl:sce8200 hypothetical protein.
 
     0.862
Ccel_1499
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: gsu:GSU0972 AAA family ATPase.
 
   
 0.855
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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