Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_1552PFAM: protein of unknown function DUF1232; KEGG: cpy:Cphy_3605 hypothetical protein. (121 aa)    
Predicted Functional Partners:
Ccel_1553
Hypothetical protein; KEGG: cau:Caur_2780 endonuclease/exonuclease/phosphatase.
       0.459
Ccel_1554
KEGG: cpf:CPF_1618 OB-fold nucleic acid binding domain-containing protein.
       0.459
Ccel_1871
KEGG: cbe:Cbei_3616 transcriptional regulator, XRE family.
  
     0.451
Ccel_1555
PFAM: phosphoesterase PA-phosphatase related; KEGG: tpd:Teth39_0213 phosphoesterase, PA-phosphatase related.
       0.421
Ccel_1551
PFAM: glycoside hydrolase family 26; cellulosome protein dockerin type I; KEGG: cth:Cthe_0032 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 26 family.
       0.420
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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