Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_1561PFAM: small acid-soluble spore protein alpha/beta type; KEGG: ckl:CKL_3529 small acid-soluble spore protein. (66 aa)    
Predicted Functional Partners:
Ccel_2282
TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein; KEGG: cth:Cthe_0122 SpoVA protein.
  
  
 0.784
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.777
Ccel_2281
TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein; KEGG: cth:Cthe_0123 stage V sporulation protein AD.
  
  
 0.777
Ccel_2280
TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein; KEGG: cth:Cthe_0124 SpoVA protein.
  
  
 0.766
Ccel_3088
TIGRFAM: transcriptional regulator, AbrB family; stage V sporulation protein T; PFAM: SpoVT/AbrB domain protein; KEGG: cth:Cthe_2655 AbrB family transcriptional regulator.
  
  
 0.766
Ccel_1895
KEGG: cth:Cthe_0813 SpoIVB peptidase; TIGRFAM: stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB; SMART: PDZ/DHR/GLGF domain protein.
  
     0.759
Ccel_3083
TIGRFAM: sporulation protein YabP; PFAM: YabP family protein; KEGG: cth:Cthe_2659 YabP-like protein.
  
     0.755
Ccel_2062
RNA polymerase, sigma 28 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.753
Ccel_2061
RNA polymerase, sigma 28 subunit, SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
    0.745
Ccel_0573
TIGRFAM: sporulation protein YqfD; PFAM: putative stage IV sporulation YqfD; KEGG: cth:Cthe_1072 putative stage IV sporulation YqfD.
 
     0.743
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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