Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1595PFAM: Integrase catalytic region; KEGG: ckl:CKL_3445 transposase. (266 aa)    
Predicted Functional Partners:
Ccel_1596
PFAM: transposase IS3/IS911 family protein; KEGG: lwe:lwe2186 transposase, putative.
 
    0.898
Ccel_0207
PFAM: transposase IS3/IS911 family protein; KEGG: lwe:lwe2186 transposase, putative.
 
    0.729
Ccel_0904
PFAM: transposase IS3/IS911 family protein; KEGG: lwe:lwe2186 transposase, putative.
 
    0.729
Ccel_1162
PFAM: transposase IS3/IS911 family protein; KEGG: lwe:lwe2186 transposase, putative.
 
    0.729
Ccel_1208
PFAM: transposase IS3/IS911 family protein; KEGG: lwe:lwe2186 transposase, putative.
 
    0.729
Ccel_1377
PFAM: transposase IS3/IS911 family protein; KEGG: lwe:lwe2186 transposase, putative.
 
    0.729
Ccel_1574
PFAM: transposase IS3/IS911 family protein; KEGG: lwe:lwe2186 transposase, putative.
 
    0.729
Ccel_1585
PFAM: transposase IS3/IS911 family protein; KEGG: lwe:lwe2186 transposase, putative.
 
    0.729
Ccel_2155
PFAM: transposase IS3/IS911 family protein; KEGG: lwe:lwe2186 transposase, putative.
 
    0.729
Ccel_2372
PFAM: transposase IS3/IS911 family protein; KEGG: lwe:lwe2186 transposase, putative.
 
    0.729
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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