Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1613Hypothetical protein. (64 aa)    
Predicted Functional Partners:
Ccel_1614
PFAM: oxidoreductase/nitrogenase component 1; KEGG: ckl:CKL_1743 VnfN.
       0.513
Ccel_1615
PFAM: oxidoreductase/nitrogenase component 1; KEGG: mac:MA1631 nitrogenase associated protein E.
       0.513
nifH
NifH/frxC-family protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
       0.510
Ccel_1612
PFAM: aminotransferase class-III; KEGG: reu:Reut_A2723 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein.
       0.473
dapA-2
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.462
Ccel_1617
PFAM: GCN5-related N-acetyltransferase; KEGG: ton:TON_1418 ribosomal protein-alanine acetyltransferase.
       0.452
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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