Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1637Hypothetical protein; KEGG: cth:Cthe_0351 PpiC-type peptidyl-prolyl cis-trans isomerase. (283 aa)    
Predicted Functional Partners:
Ccel_0290
TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; Peptidoglycan-binding domain 1 protein; peptidase S41; KEGG: cth:Cthe_1930 carboxyl-terminal protease; Belongs to the peptidase S41A family.
  
 
 0.614
Ccel_1146
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0744 copper amine oxidase-like protein.
  
 
 0.614
Ccel_2904
TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: cth:Cthe_1857 carboxyl-terminal protease; Belongs to the peptidase S41A family.
  
 
 0.614
Ccel_0390
Hypothetical protein; KEGG: csc:Csac_0946 TPR repeat-containing protein.
   
 
 0.582
Ccel_0432
KEGG: tte:TTE1799 hypothetical protein.
   
 
 0.582
Ccel_0602
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: TPR Domain containing protein.
   
 
 0.582
Ccel_1187
PFAM: TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aoe:Clos_1403 TPR repeat-containing protein.
   
 
 0.582
Ccel_3209
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cth:Cthe_1030 TPR repeat-containing protein.
   
 
 0.582
Ccel_2339
KEGG: dsy:DSY2854 hypothetical protein.
  
 
 0.578
Ccel_0072
KEGG: abm:ABSDF3536 hypothetical protein.
   
 
 0.575
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.