Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1639PFAM: Dak kinase; KEGG: smd:Smed_3823 glycerone kinase. (333 aa)    
Predicted Functional Partners:
Ccel_1638
TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: oan:Oant_4070 dihydroxyacetone kinase, L subunit.
 
 0.999
Ccel_1034
Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: afl:Aflv_2782 transcriptional regulator of deoxyribonucleoside metabolism.
     0.891
Ccel_1640
TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: msu:MS0383 RpiB protein.
    
 0.848
Ccel_2486
3-dehydroquinate synthase; PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: cbe:Cbei_4092 3-dehydroquinate synthase.
  
 
 0.837
Ccel_1641
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pmr:PMI3007 short chain dehydrogenase.
 
 
 0.829
gpsA
PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Ketopantoate reductase ApbA/PanE domain protein; KEGG: cth:Cthe_1022 glycerol-3-phosphate dehydrogenase (NAD(P)(+)).
   
 
 0.807
Ccel_0952
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ssp:SSP0524 putative dehydrogenase.
   
  0.568
Ccel_3224
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: csa:Csal_0359 alcohol dehydrogenase GroES-like protein.
   
  0.568
Ccel_1642
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_2044 periplasmic binding protein/LacI transcriptional regulator.
       0.426
Ccel_1637
Hypothetical protein; KEGG: cth:Cthe_0351 PpiC-type peptidyl-prolyl cis-trans isomerase.
       0.425
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.