Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1641PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pmr:PMI3007 short chain dehydrogenase. (255 aa)    
Predicted Functional Partners:
Ccel_1639
PFAM: Dak kinase; KEGG: smd:Smed_3823 glycerone kinase.
 
 
 0.829
Ccel_2378
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bld:BLi00401 lichenysin synthetase A.
  
 
 0.698
Ccel_1640
TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: msu:MS0383 RpiB protein.
     
 0.677
Ccel_1638
TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: oan:Oant_4070 dihydroxyacetone kinase, L subunit.
 
 
 
 0.611
Ccel_2331
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bsu:BSU17180 polyketide synthase of type I.
  
 
 0.578
Ccel_1642
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_2044 periplasmic binding protein/LacI transcriptional regulator.
       0.527
Ccel_0952
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ssp:SSP0524 putative dehydrogenase.
  
  
 0.473
Ccel_3224
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: csa:Csal_0359 alcohol dehydrogenase GroES-like protein.
  
  
 0.466
Ccel_0854
PfaD family protein; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PfaD family protein; PFAM: 2-nitropropane dioxygenase NPD; Acyl transferase; KEGG: gur:Gura_3105 malonyl CoA-acyl carrier protein transacylase.
  
 
 0.443
Ccel_1643
PFAM: inner-membrane translocator; KEGG: dac:Daci_4580 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
       0.424
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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