Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1646Putative sensor with HAMP domain; PFAM: histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: csc:Csac_2551 integral membrane sensor signal transduction histidine kinase. (617 aa)    
Predicted Functional Partners:
Ccel_1645
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cbe:Cbei_4431 response regulator receiver protein.
 
 
 0.974
Ccel_0995
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_0684 response regulator receiver protein.
  
 
 0.892
Ccel_0147
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bha:BH2109 hypothetical protein.
  
 
 0.883
Ccel_0149
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bha:BH2109 hypothetical protein.
  
 
 0.881
Ccel_1982
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cbe:Cbei_4431 response regulator receiver protein.
  
 
 0.880
Ccel_3249
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_0684 response regulator receiver protein.
  
 
 0.876
Ccel_0198
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_0684 response regulator receiver protein.
  
 
 0.870
Ccel_2452
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: dth:DICTH_0042 two-component response regulator.
  
 
 0.866
Ccel_1138
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cbe:Cbei_4676 response regulator receiver protein.
  
 
 0.859
Ccel_2113
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_0684 response regulator receiver protein.
  
 
 0.857
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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