STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1670PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: cpe:CPE0147 beta-D-glucuronidase; Belongs to the glycosyl hydrolase 2 family. (598 aa)    
Predicted Functional Partners:
uxaC-2
PFAM: Glucuronate isomerase; KEGG: csc:Csac_1949 glucuronate isomerase.
 
 
 0.961
uxaC
PFAM: Glucuronate isomerase; KEGG: bsu:BSU12300 glucuronate isomerase.
 
 
 0.941
Ccel_1009
PFAM: aldo/keto reductase; KEGG: sus:Acid_2860 aldehyde reductase.
   
 
 0.902
Ccel_1675
TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: cpe:CPE0153 glucuronide permease.
 
  
 0.848
Ccel_1549
KEGG: pmo:Pmob_0233 putative outer membrane protein.
  
  
  0.825
Ccel_3438
PFAM: glycoside hydrolase family 43; KEGG: oih:OB2087 arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
    
 0.807
Ccel_1011
PFAM: glycoside hydrolase family 43; KEGG: cpy:Cphy_0531 alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
    
 0.804
Ccel_1036
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: gtn:GTNG_1791 alpha-L-arabinofuranosidase.
    
 0.802
Ccel_1221
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: gtn:GTNG_1791 alpha-L-arabinofuranosidase.
    
 0.802
Ccel_1255
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bcl:ABC3371 alpha-L-arabinofuranosidase.
    
 0.802
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.