Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Ccel_1682KEGG: cth:Cthe_1061 hypothetical protein. (230 aa)    
Predicted Functional Partners:
Ccel_0158
PFAM: protein of unknown function DUF327; KEGG: cth:Cthe_2106 hypothetical protein.
 
     0.723
Ccel_2279
PFAM: CheC domain protein; KEGG: cth:Cthe_0126 CheC-like protein.
 
     0.722
Ccel_1315
PFAM: type IV pilus assembly PilZ; KEGG: cth:Cthe_0488 type IV pilus assembly PilZ.
  
     0.687
Ccel_1886
PFAM: cell division protein FtsA; KEGG: cno:NT01CX_1629 cell division protein FtsA.
 
     0.644
Ccel_0091
KEGG: cth:Cthe_2247 regulatory protein, MerR.
  
     0.631
Ccel_2021
PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 hypothetical protein.
 
     0.620
Ccel_0028
PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_2410 hypothetical protein.
 
     0.560
Ccel_2038
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 flagellar motor switch protein.
 
     0.541
Ccel_0107
PFAM: FlgN family protein; KEGG: cth:Cthe_2216 hypothetical protein.
  
     0.521
Ccel_1681
PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cth:Cthe_1060 AIR synthase related protein-like protein.
       0.518
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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