STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1716KEGG: cth:Cthe_1850 hypothetical protein. (159 aa)    
Predicted Functional Partners:
Ccel_0745
PFAM: Heavy metal transport/detoxification protein; KEGG: cth:Cthe_1849 heavy metal transport/detoxification protein.
 
     0.794
Ccel_1713
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cth:Cthe_1846 periplasmic sensor signal transduction histidine kinase.
 
     0.656
Ccel_2991
KEGG: cbe:Cbei_1948 hypothetical protein.
  
     0.644
Ccel_2046
KEGG: cth:Cthe_0470 hypothetical protein.
  
     0.526
Ccel_1717
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cth:Cthe_0727 cell envelope-related transcriptional attenuator.
       0.515
Ccel_1715
TIGRFAM: copper ion binding protein; PFAM: Heavy metal transport/detoxification protein; KEGG: cth:Cthe_0738 copper ion binding protein.
       0.510
Ccel_1116
KEGG: aoe:Clos_0885 hypothetical protein.
  
     0.502
Ccel_0718
KEGG: cth:Cthe_0760 hypothetical protein.
  
     0.493
Ccel_0592
PFAM: regulatory protein MerR; KEGG: cth:Cthe_0804 MerR family transcriptional regulator.
  
     0.490
Ccel_3377
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cpy:Cphy_2411 glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.476
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.