STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1735KEGG: cth:Cthe_0704 hypothetical protein. (214 aa)    
Predicted Functional Partners:
Ccel_2076
KEGG: cth:Cthe_0889 putative transmembrane anti-sigma factor.
  
     0.772
Ccel_1911
KEGG: cth:Cthe_0840 hypothetical protein.
  
     0.704
Ccel_2423
PFAM: UspA domain protein; KEGG: cth:Cthe_3089 hypothetical protein.
  
     0.703
Ccel_2085
KEGG: cth:Cthe_3174 hypothetical protein.
  
     0.689
Ccel_0097
KEGG: cth:Cthe_2241 hypothetical protein.
  
     0.654
Ccel_2539
KEGG: cth:Cthe_1214 hypothetical protein.
  
     0.643
Ccel_1351
KEGG: cth:Cthe_0187 hypothetical protein.
  
     0.625
Ccel_1356
KEGG: cth:Cthe_2351 hypothetical protein.
  
     0.621
Ccel_2988
KEGG: amt:Amet_2970 hypothetical protein.
  
     0.615
Ccel_2063
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.604
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.