Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Ccel_1744TIGRFAM: sporulation protein YtfJ; PFAM: Sporulation protein YtfJ; KEGG: cth:Cthe_0691 hypothetical protein. (152 aa)    
Predicted Functional Partners:
Ccel_1745
KEGG: cth:Cthe_0690 hypothetical protein.
  
    0.861
Ccel_1912
TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE; KEGG: cth:Cthe_0841 mutants block sporulation after engulfment.
  
     0.758
Ccel_1878
TIGRFAM: sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein; KEGG: cth:Cthe_1274 nucleoside recognition.
  
    0.755
Ccel_1913
TIGRFAM: stage III sporulation protein AD; PFAM: Sporulation stage III protein AD; KEGG: cth:Cthe_0842 stage III sporulation protein AD.
  
     0.748
Ccel_1895
KEGG: cth:Cthe_0813 SpoIVB peptidase; TIGRFAM: stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB; SMART: PDZ/DHR/GLGF domain protein.
  
    0.747
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.740
Ccel_2063
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.740
Ccel_2060
TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain protein; KEGG: cth:Cthe_0449 hypothetical protein.
  
  
 0.737
Ccel_1703
PFAM: peptidase S14 ClpP; KEGG: cth:Cthe_1097 ATP-dependent Clp protease proteolytic subunit ClpP.
  
    0.721
Ccel_0521
PFAM: GerA spore germination protein; KEGG: cth:Cthe_0667 GerA spore germination protein.
  
     0.719
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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