STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1761PFAM: peptidase M42 family protein; KEGG: cth:Cthe_0608 peptidase M42. (348 aa)    
Predicted Functional Partners:
Ccel_1760
PFAM: peptidase M20; peptidase M42 family protein; KEGG: cth:Cthe_0609 peptidase M42.
 
    
0.749
Ccel_1762
Peptidase M42 family protein; PFAM: peptidase M18 aminopeptidase I; peptidase M20; peptidase M42 family protein; KEGG: cth:Cthe_0607 peptidase M42.
 
    
0.725
Ccel_1759
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: cth:Cthe_0611 RNA-metabolising metallo-beta-lactamase.
       0.475
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.