STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1765Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: tte:TTE2525 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (325 aa)    
Predicted Functional Partners:
Ccel_1766
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_2256 oligopeptide ABC transporter, permease component.
 
 0.999
Ccel_1767
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC0177 oligopeptide transport permease protein.
 0.997
Ccel_0047
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_2964 binding-protein-dependent transport systems inner membrane component.
  
 0.990
Ccel_1768
PFAM: extracellular solute-binding protein family 5; KEGG: tpd:Teth39_0202 extracellular solute-binding protein.
 
 
 0.989
Ccel_0608
PFAM: extracellular solute-binding protein family 5; KEGG: cth:Cthe_0910 extracellular solute-binding protein.
 
 
 0.979
Ccel_0048
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_2965 binding-protein-dependent transport systems inner membrane component.
 
 0.913
Ccel_0044
PFAM: extracellular solute-binding protein family 5; KEGG: cth:Cthe_2961 extracellular solute-binding protein.
 
  
 0.845
Ccel_1764
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: tte:TTE2526 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
    
0.791
Ccel_1763
Hypothetical protein.
       0.773
Ccel_2053
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_0463 flagellar basal-body rod protein FlgC.
    
 
 0.412
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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