Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1784PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: cac:CAC2416 peptidoglycan-binding domain-containing protein. (236 aa)    
Predicted Functional Partners:
Ccel_0747
PFAM: NLP/P60 protein; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: csc:Csac_1052 NLP/P60 protein.
     
 0.606
Ccel_0132
TIGRFAM: cyanophycin synthetase; PFAM: phosphoribosylglycinamide synthetase; cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; RimK domain protein ATP-grasp; KEGG: cth:Cthe_2204 cyanophycin synthetase.
  
  
 0.489
Ccel_2331
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bsu:BSU17180 polyketide synthase of type I.
  
  
 0.482
Ccel_1535
PFAM: tyrosine protein kinase; PASTA domain containing protein; Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: cth:Cthe_0574 serine/threonine protein kinase.
     
 0.459
Ccel_0478
PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: cth:Cthe_0979 peptidoglycan glycosyltransferase.
      
 0.455
Ccel_2876
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: cth:Cthe_1760 1A family penicillin-binding protein.
      
 0.421
Ccel_1782
KEGG: cbb:CLD_3728 rubrerythrin family protein.
       0.419
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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