STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1812PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sgr:SGR_2286 hypothetical protein. (366 aa)    
Predicted Functional Partners:
Ccel_1876
TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; KEGG: cth:Cthe_0655 cysteine desulfurase family protein.
    
   0.808
Ccel_1811
PFAM: glycosyl transferase family 2; KEGG: mbu:Mbur_2229 glycosyl transferase family protein.
     
 0.782
Ccel_1813
PFAM: glycosyl transferase family 2; KEGG: sma:SAV_835 glycosyltransferase.
       0.648
Ccel_1814
PFAM: aminotransferase class-III; KEGG: bmc:BAbS19_II03620 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.635
Ccel_1816
PFAM: glycosyl transferase family 2; KEGG: sgr:SGR_2292 putative sugar transferase.
 
   
 0.574
Ccel_1815
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: rca:Rcas_0368 NAD-dependent epimerase/dehydratase.
 
   
 0.555
celCCF
Glycoside hydrolase family 48; Probable endoglucanase involved in the degradation of cellulose or related beta-glucans; Belongs to the glycosyl hydrolase 48 (cellulase L) family.
  
   
 0.490
Ccel_1810
PFAM: transposase IS116/IS110/IS902 family protein; KEGG: tte:TTE1030 transposase.
       0.445
Ccel_1207
PFAM: cellulosome protein dockerin type I; Kelch repeat-containing protein; KEGG: cth:Cthe_1398 cellulosome enzyme, dockerin type I.
  
     0.429
Ccel_1817
PFAM: polysaccharide biosynthesis protein; KEGG: mmz:MmarC7_1361 polysaccharide biosynthesis protein.
       0.422
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.