STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1842Hypothetical protein. (125 aa)    
Predicted Functional Partners:
Ccel_1843
Hypothetical protein.
       0.682
Ccel_1844
Hypothetical protein.
       0.682
Ccel_1845
KEGG: cbf:CLI_3296 hypothetical protein.
       0.682
Ccel_1846
KEGG: ckl:CKL_2947 hypothetical protein.
       0.668
Ccel_1847
Hypothetical protein; KEGG: bat:BAS0421 prophage LambdaBa04, DNA binding protein, putative.
       0.668
Ccel_1841
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: hmo:HM1_0052 hypothetical protein.
       0.584
Ccel_1848
KEGG: cdf:CD0846 hypothetical protein.
       0.454
Ccel_1840
KEGG: hypothetical protein.
       0.430
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.