Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_1861PFAM: homocysteine S-methyltransferase; KEGG: tex:Teth514_1211 homocysteine S-methyltransferase. (434 aa)    
Predicted Functional Partners:
Ccel_2473
PFAM: dihydropteroate synthase DHPS; KEGG: mta:Moth_1207 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase.
  
 0.985
Ccel_3199
PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: csc:Csac_0423 cobalamin B12-binding domain-containing protein.
  
 0.979
Ccel_1860
PFAM: Rhomboid family protein; KEGG: cth:Cthe_1048 rhomboid family protein.
     
 0.782
Ccel_2474
PFAM: methylenetetrahydrofolate reductase; homocysteine S-methyltransferase; KEGG: ckl:CKL_1762 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein.
 
  
0.747
Ccel_1862
PFAM: AMP-dependent synthetase and ligase; KEGG: csc:Csac_0934 AMP-dependent synthetase and ligase.
  
  
 0.535
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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