Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_1868PFAM: cyclase family protein; KEGG: amt:Amet_4419 cyclase family protein. (215 aa)    
Predicted Functional Partners:
Ccel_1867
PFAM: Excinuclease ABC C subunit domain protein; KEGG: cbt:CLH_0313 GIY-YIG domain protein.
       0.773
Ccel_0495
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: cth:Cthe_0552 transcriptional regulator.
  
    0.648
Ccel_1869
PFAM: Rubrerythrin; KEGG: cbk:CLL_A1055 rubrerythrin.
       0.460
Ccel_0734
PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; cellulosome protein dockerin type I; KEGG: hau:Haur_0296 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 9 (cellulase E) family.
  
     0.431
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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