Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ccel_1907KEGG: cth:Cthe_0836 hypothetical protein. (183 aa)    
Predicted Functional Partners:
Ccel_1906
KEGG: cth:Cthe_0835 hypothetical protein.
 
     0.943
Ccel_2873
PFAM: membrane protein of unknown function; KEGG: cth:Cthe_2067 hypothetical protein.
  
     0.761
Ccel_1853
KEGG: tpd:Teth39_0898 hypothetical protein.
  
     0.749
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
    0.735
Ccel_1908
PFAM: protein of unknown function DUF322; KEGG: cth:Cthe_0837 hypothetical protein.
 
     0.698
Ccel_1915
TIGRFAM: stage III sporulation protein AB; PFAM: Sporulation stage III protein AB; KEGG: cth:Cthe_0844 stage III sporulation protein spoIIIAB.
 
     0.685
Ccel_1911
KEGG: cth:Cthe_0840 hypothetical protein.
 
    0.680
Ccel_1718
PFAM: copper amine oxidase domain protein; KEGG: cpo:COPRO5265_1378 putative branched chain amino acid ABC transporter substrate-binding protein.
  
     0.648
Ccel_1194
PFAM: PRC-barrel domain protein; KEGG: cth:Cthe_3197 PRC-barrel domain-containing protein.
  
     0.633
Ccel_3340
TIGRFAM: sporulation protein YtxC; PFAM: Sporulation protein YtxC; KEGG: cth:Cthe_2071 hypothetical protein.
  
     0.629
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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