Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Ccel_1908PFAM: protein of unknown function DUF322; KEGG: cth:Cthe_0837 hypothetical protein. (127 aa)    
Predicted Functional Partners:
Ccel_1907
KEGG: cth:Cthe_0836 hypothetical protein.
 
     0.698
Ccel_1906
KEGG: cth:Cthe_0835 hypothetical protein.
 
     0.619
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
    0.596
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
     0.585
Ccel_1909
KEGG: cth:Cthe_0838 hypothetical protein.
  
    0.562
Ccel_0708
Putative helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
 
     0.508
Ccel_2240
PFAM: protein of unknown function DUF965; KEGG: cth:Cthe_0151 hypothetical protein; Belongs to the UPF0297 family.
 
    0.484
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.461
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.461
Ccel_1902
PFAM: Polyprenyl synthetase; KEGG: cth:Cthe_0831 farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
       0.455
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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