Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_1918PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD1618 ABC transporter, ATP-binding protein. (232 aa)    
Predicted Functional Partners:
Ccel_1919
PFAM: regulatory protein GntR HTH; KEGG: cbt:CLH_0644 transcriptional regulator, GntR family.
 
  
 0.967
Ccel_1917
KEGG: cdf:CD1619 putative ABC transporter, peremase protein.
 
  
 0.965
Ccel_1920
KEGG: btk:BT9727_4703 hypothetical protein.
       0.729
Ccel_2604
PFAM: regulatory protein GntR HTH; KEGG: nth:Nther_0732 transcriptional regulator, GntR family.
 
  
 0.554
Ccel_3101
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_2620 protein of unknown function DUF1078-like protein.
   
    0.532
Ccel_2158
KEGG: tle:Tlet_1861 putative ABC-2 type transport system permease protein.
  
 
 0.486
Ccel_1916
TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase; KEGG: cth:Cthe_0845 stage III sporulation protein spoIIIAA.
       0.444
Ccel_2609
PFAM: regulatory protein GntR HTH; KEGG: aoe:Clos_0645 GntR family transcriptional regulator.
 
    0.442
Ccel_1915
TIGRFAM: stage III sporulation protein AB; PFAM: Sporulation stage III protein AB; KEGG: cth:Cthe_0844 stage III sporulation protein spoIIIAB.
       0.434
Ccel_1160
KEGG: hmo:HM1_1647 hypothetical protein.
  
 
 0.433
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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