Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1920KEGG: btk:BT9727_4703 hypothetical protein. (135 aa)    
Predicted Functional Partners:
Ccel_1918
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD1618 ABC transporter, ATP-binding protein.
       0.729
Ccel_1919
PFAM: regulatory protein GntR HTH; KEGG: cbt:CLH_0644 transcriptional regulator, GntR family.
       0.729
Ccel_1917
KEGG: cdf:CD1619 putative ABC transporter, peremase protein.
       0.727
Ccel_1921
KEGG: cth:Cthe_0846 hypothetical protein.
       0.439
Ccel_1916
TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase; KEGG: cth:Cthe_0845 stage III sporulation protein spoIIIAA.
       0.418
Ccel_1915
TIGRFAM: stage III sporulation protein AB; PFAM: Sporulation stage III protein AB; KEGG: cth:Cthe_0844 stage III sporulation protein spoIIIAB.
       0.408
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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