Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1928KEGG: ckl:CKL_3623 hypothetical protein. (62 aa)    
Predicted Functional Partners:
Ccel_1929
KEGG: nth:Nther_2705 hypothetical protein.
       0.559
Ccel_1735
KEGG: cth:Cthe_0704 hypothetical protein.
  
     0.515
Ccel_2988
KEGG: amt:Amet_2970 hypothetical protein.
  
     0.452
Ccel_1194
PFAM: PRC-barrel domain protein; KEGG: cth:Cthe_3197 PRC-barrel domain-containing protein.
  
     0.441
Ccel_1461
KEGG: cth:Cthe_1262 hypothetical protein.
  
     0.439
Ccel_0624
PFAM: Radical SAM domain protein; KEGG: cbe:Cbei_4361 radical SAM domain protein.
 
     0.419
Ccel_1967
PFAM: protein of unknown function DUF362; KEGG: cpy:Cphy_1972 hypothetical protein.
  
     0.404
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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