Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Ccel_1945TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; CoA protein activase; KEGG: cth:Cthe_1329 putative CoA-substrate-specific enzyme activase. (1426 aa)    
Predicted Functional Partners:
Ccel_2308
PFAM: protein of unknown function DUF1113; KEGG: ckl:CKL_0747 hypothetical protein.
 
     0.666
aspS
aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.655
hisS
TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: ctc:CTC01958 histidyl-tRNA synthetase.
       0.605
Ccel_0197
PFAM: protein of unknown function DUF1113; KEGG: cpf:CPF_1398 hypothetical protein.
 
     0.584
Ccel_2220
KEGG: cth:Cthe_0352 hypothetical protein.
 
   
0.485
Ccel_2219
KEGG: cth:Cthe_0353 hypothetical protein.
 
   
0.480
Ccel_1954
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: cth:Cthe_1040 DNA polymerase III, delta subunit.
       0.444
Ccel_2218
TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cth:Cthe_0354 putative CoA-substrate-specific enzyme activase.
 
   
0.443
Ccel_1948
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_1341 coproporphyrinogen III oxidase.
 
     0.407
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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