STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1957PFAM: GCN5-related N-acetyltransferase; KEGG: cth:Cthe_0603 GCN5-related N-acetyltransferase. (177 aa)    
Predicted Functional Partners:
Ccel_0277
PFAM: Fibronectin type III domain protein; KEGG: cth:Cthe_2612 fibronectin, type III.
  
     0.723
Ccel_2916
PFAM: GCN5-related N-acetyltransferase; KEGG: cth:Cthe_1870 GCN5-related N-acetyltransferase.
 
  
 0.691
Ccel_0254
KEGG: cth:Cthe_2130 hypothetical protein.
  
     0.648
Ccel_2046
KEGG: cth:Cthe_0470 hypothetical protein.
  
     0.630
Ccel_0042
TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: cth:Cthe_2419 DNA replication protein DnaD.
  
     0.621
Ccel_3432
KEGG: cth:Cthe_2520 hypothetical protein.
  
    0.600
Ccel_2311
PFAM: protein of unknown function DUF1540; KEGG: cth:Cthe_3071 hypothetical protein.
  
     0.591
Ccel_0728
PFAM: type 3a cellulose-binding domain protein; cellulosome anchoring protein cohesin region; protein of unknown function DUF291; KEGG: cth:Cthe_3077 cellulosome anchoring protein, cohesin region.
  
    0.582
Ccel_1970
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: cth:Cthe_0668 spore germination protein.
  
     0.582
Ccel_0804
KEGG: cth:Cthe_2732 hypothetical protein.
  
     0.579
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.