Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1960TIGRFAM: YhgE/Pip N-terminal domain protein; YhgE/Pip C-terminal domain protein; PFAM: ABC-2 type transporter; KEGG: cpy:Cphy_0609 hypothetical protein. (737 aa)    
Predicted Functional Partners:
Ccel_1959
PFAM: regulatory protein MarR; KEGG: ckl:CKL_0101 transcriptional regulator.
       0.513
Ccel_3344
PFAM: protein of unknown function UPF0118; KEGG: bwe:BcerKBAB4_1797 hypothetical protein.
  
   0.476
Ccel_1961
Hypothetical protein.
       0.466
Ccel_3210
PFAM: lipolytic protein G-D-S-L family; KEGG: lin:lin0634 hypothetical protein.
  
    0.443
Ccel_0699
KEGG: csc:Csac_0715 amino acid transporter-like protein.
 
     0.428
Ccel_0601
PFAM: cell divisionFtsK/SpoIIIE; KEGG: cth:Cthe_1095 cell divisionFtsK/SpoIIIE.
  
  
 0.410
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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