node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ccel_1964 | Ccel_3084 | Ccel_1964 | Ccel_3084 | PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein. | PFAM: RNA-binding S4 domain protein; KEGG: cth:Cthe_2658 RNA-binding S4. | 0.798 |
Ccel_1964 | rplB | Ccel_1964 | Ccel_0761 | PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.786 |
Ccel_1964 | rplE | Ccel_1964 | Ccel_0770 | PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein. | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.787 |
Ccel_1964 | rplF | Ccel_1964 | Ccel_0773 | PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein. | Ribosomal protein L6 signature 1; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.791 |
Ccel_1964 | rplK | Ccel_1964 | Ccel_0308 | PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.822 |
Ccel_1964 | rplM | Ccel_1964 | Ccel_0794 | PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.799 |
Ccel_1964 | rplN | Ccel_1964 | Ccel_0768 | PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.781 |
Ccel_1964 | rplR | Ccel_1964 | Ccel_0774 | PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.786 |
Ccel_1964 | rplV | Ccel_1964 | Ccel_0763 | PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein. | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.778 |
Ccel_1964 | rplW | Ccel_1964 | Ccel_0760 | PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein. | Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.781 |
Ccel_3084 | Ccel_1964 | Ccel_3084 | Ccel_1964 | PFAM: RNA-binding S4 domain protein; KEGG: cth:Cthe_2658 RNA-binding S4. | PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein. | 0.798 |
Ccel_3084 | rplB | Ccel_3084 | Ccel_0761 | PFAM: RNA-binding S4 domain protein; KEGG: cth:Cthe_2658 RNA-binding S4. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.779 |
Ccel_3084 | rplE | Ccel_3084 | Ccel_0770 | PFAM: RNA-binding S4 domain protein; KEGG: cth:Cthe_2658 RNA-binding S4. | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.779 |
Ccel_3084 | rplF | Ccel_3084 | Ccel_0773 | PFAM: RNA-binding S4 domain protein; KEGG: cth:Cthe_2658 RNA-binding S4. | Ribosomal protein L6 signature 1; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.779 |
Ccel_3084 | rplK | Ccel_3084 | Ccel_0308 | PFAM: RNA-binding S4 domain protein; KEGG: cth:Cthe_2658 RNA-binding S4. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.577 |
Ccel_3084 | rplM | Ccel_3084 | Ccel_0794 | PFAM: RNA-binding S4 domain protein; KEGG: cth:Cthe_2658 RNA-binding S4. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.782 |
Ccel_3084 | rplN | Ccel_3084 | Ccel_0768 | PFAM: RNA-binding S4 domain protein; KEGG: cth:Cthe_2658 RNA-binding S4. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.782 |
Ccel_3084 | rplR | Ccel_3084 | Ccel_0774 | PFAM: RNA-binding S4 domain protein; KEGG: cth:Cthe_2658 RNA-binding S4. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.779 |
Ccel_3084 | rplV | Ccel_3084 | Ccel_0763 | PFAM: RNA-binding S4 domain protein; KEGG: cth:Cthe_2658 RNA-binding S4. | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.781 |
Ccel_3084 | rplW | Ccel_3084 | Ccel_0760 | PFAM: RNA-binding S4 domain protein; KEGG: cth:Cthe_2658 RNA-binding S4. | Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.779 |