Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1967PFAM: protein of unknown function DUF362; KEGG: cpy:Cphy_1972 hypothetical protein. (301 aa)    
Predicted Functional Partners:
Ccel_1966
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bcl:ABC0853 hypothetical protein.
       0.705
Ccel_1968
Hypothetical protein.
       0.689
Ccel_1969
TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: cth:Cthe_0669 spore germination B3 GerAC like.
       0.680
Ccel_1970
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: cth:Cthe_0668 spore germination protein.
       0.680
Ccel_1971
PFAM: GerA spore germination protein; KEGG: cth:Cthe_0667 GerA spore germination protein.
       0.680
Ccel_2894
KEGG: swo:Swol_0655 hypothetical protein; Belongs to the UPF0342 family.
  
     0.590
Ccel_1735
KEGG: cth:Cthe_0704 hypothetical protein.
  
     0.497
Ccel_2219
KEGG: cth:Cthe_0353 hypothetical protein.
  
     0.456
Ccel_1972
PFAM: glycoside hydrolase family 43; KEGG: cth:Cthe_0661 ricin B lectin; Belongs to the glycosyl hydrolase 43 family.
       0.412
Ccel_2306
PFAM: aldo/keto reductase; KEGG: amt:Amet_0907 aldo/keto reductase.
 
     0.412
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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