Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1969TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: cth:Cthe_0669 spore germination B3 GerAC like. (437 aa)    
Predicted Functional Partners:
Ccel_1970
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: cth:Cthe_0668 spore germination protein.
 
  
 0.952
Ccel_1971
PFAM: GerA spore germination protein; KEGG: cth:Cthe_0667 GerA spore germination protein.
 
  
 0.944
Ccel_0522
PFAM: Spore germination protein; KEGG: cth:Cthe_0670 spore germination protein.
 
  
 0.797
Ccel_1968
Hypothetical protein.
       0.762
Ccel_0652
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: amt:Amet_1283 spore germination protein.
 
  
 0.742
Ccel_3011
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: aoe:Clos_2720 spore germination protein.
 
  
 0.716
Ccel_0521
PFAM: GerA spore germination protein; KEGG: cth:Cthe_0667 GerA spore germination protein.
 
  
 0.682
Ccel_1967
PFAM: protein of unknown function DUF362; KEGG: cpy:Cphy_1972 hypothetical protein.
       0.680
Ccel_0036
TIGRFAM: germination protein YpeB; PFAM: Propeptide PepSY amd peptidase M4; KEGG: cth:Cthe_2416 peptidase.
 
   
 0.671
Ccel_0654
PFAM: GerA spore germination protein; KEGG: cac:CA_P0020 spore germination protein, GrkA.
 
  
 0.641
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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