Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1970TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: cth:Cthe_0668 spore germination protein. (370 aa)    
Predicted Functional Partners:
Ccel_1969
TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: cth:Cthe_0669 spore germination B3 GerAC like.
 
  
 0.952
Ccel_1971
PFAM: GerA spore germination protein; KEGG: cth:Cthe_0667 GerA spore germination protein.
 
  
 0.945
Ccel_0523
TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: cth:Cthe_0669 spore germination B3 GerAC like.
 
  
 0.796
Ccel_1968
Hypothetical protein.
       0.762
Ccel_0652
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: amt:Amet_1283 spore germination protein.
  
     0.753
Ccel_3013
TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: aoe:Clos_2719 spore germination B3 GerAC family protein.
 
  
 0.749
Ccel_0521
PFAM: GerA spore germination protein; KEGG: cth:Cthe_0667 GerA spore germination protein.
 
  
 0.701
Ccel_1967
PFAM: protein of unknown function DUF362; KEGG: cpy:Cphy_1972 hypothetical protein.
       0.680
Ccel_0654
PFAM: GerA spore germination protein; KEGG: cac:CA_P0020 spore germination protein, GrkA.
 
  
 0.676
tlp
TIGRFAM: small, acid-soluble spore protein tlp; KEGG: cbe:Cbei_4610 small acid-soluble spore protein Tlp; Belongs to the Tlp family.
  
   
 0.656
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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