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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1972PFAM: glycoside hydrolase family 43; KEGG: cth:Cthe_0661 ricin B lectin; Belongs to the glycosyl hydrolase 43 family. (501 aa)    
Predicted Functional Partners:
Ccel_2530
PFAM: Ricin B lectin; cellulosome protein dockerin type I; KEGG: scl:sce5172 putative secreted protein.
 
     0.816
Ccel_1240
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; protein of unknown function DUF303 acetylesterase putative; glycoside hydrolase family 62; SMART: cellulose binding type IV; KEGG: cth:Cthe_2194 carbohydrate-binding family 6 protein.
  
     0.753
Ccel_1246
PFAM: Pectinesterase; cellulosome protein dockerin type I; KEGG: cth:Cthe_2949 pectinesterase.
 
     0.742
xyn10A
PFAM: glycoside hydrolase family 10; cellulosome protein dockerin type I; KEGG: hau:Haur_4805 glycoside hydrolase family protein.
 
   
 0.730
Ccel_1242
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: cth:Cthe_3012 carbohydrate-binding family 6 protein.
 
  
 0.709
Ccel_1236
Protein of unknown function DUF1680; PFAM: cellulosome protein dockerin type I; Carbohydrate-binding CenC domain protein; protein of unknown function DUF1680; SMART: beta and gamma crystallin; KEGG: sus:Acid_1242 hypothetical protein.
 
   
 0.708
Ccel_0997
PFAM: protein of unknown function DUF1680; KEGG: sus:Acid_1242 hypothetical protein.
 
   
 0.699
Ccel_2243
PFAM: Pectate lyase/Amb allergen; cellulosome protein dockerin type I; KEGG: cth:Cthe_2179 pectate lyase/Amb allergen.
 
   
 0.698
Ccel_1230
Carbohydrate binding family 6; PFAM: glycoside hydrolase family 10; cellulosome protein dockerin type I; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: cac:CA_P0116 xylanase.
 
   
 0.693
Ccel_1234
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; glycoside hydrolase family 62; SMART: cellulose binding type IV; KEGG: cth:Cthe_2194 carbohydrate-binding family 6 protein.
  
     0.685
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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