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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1985PFAM: inner-membrane translocator; KEGG: gka:GK1908 L-arabinose ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family. (390 aa)    
Predicted Functional Partners:
Ccel_1986
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK1909 ABC transporter ATP-binding protein.
  
 0.952
Ccel_1987
KEGG: amt:Amet_3799 putative solute-binding component of ABC transporter.
  
 0.906
Ccel_2684
PFAM: inner-membrane translocator; KEGG: gka:GK1908 L-arabinose ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.902
Ccel_2687
KEGG: rle:RL3617 putative solute-binding component of ABC transporter.
  
 0.829
Ccel_2686
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK1909 ABC transporter ATP-binding protein.
  
 0.800
Ccel_0054
KEGG: tte:TTE0289 periplasmic sugar-binding proteins.
 
  
 0.798
Ccel_1984
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bja:blr1123 ABC transporter sugar-binding protein.
 
  
 0.736
Ccel_1223
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cbe:Cbei_4462 periplasmic binding protein/LacI transcriptional regulator.
  
 0.650
Ccel_1642
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_2044 periplasmic binding protein/LacI transcriptional regulator.
  
 0.610
Ccel_1224
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_4461 ABC transporter related.
  
 0.533
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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