Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1987KEGG: amt:Amet_3799 putative solute-binding component of ABC transporter. (378 aa)    
Predicted Functional Partners:
Ccel_1985
PFAM: inner-membrane translocator; KEGG: gka:GK1908 L-arabinose ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family.
  
 0.903
Ccel_2687
KEGG: rle:RL3617 putative solute-binding component of ABC transporter.
  
  
 
0.903
Ccel_1986
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK1909 ABC transporter ATP-binding protein.
  
 0.882
Ccel_2684
PFAM: inner-membrane translocator; KEGG: gka:GK1908 L-arabinose ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family.
  
 0.817
Ccel_2686
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK1909 ABC transporter ATP-binding protein.
  
 0.790
Ccel_1988
PFAM: glycosyl transferase family 2; chitin synthase; KEGG: cpo:COPRO5265_0045 chitin synthase.
       0.416
Ccel_1984
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bja:blr1123 ABC transporter sugar-binding protein.
  
  
 0.401
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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