Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_1994KEGG: aoe:Clos_0174 hypothetical protein. (325 aa)    
Predicted Functional Partners:
Ccel_2448
PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: nth:Nther_0727 FAD dependent oxidoreductase.
 
     0.629
Ccel_1995
PFAM: ferric-uptake regulator; KEGG: cpf:CPF_2029 FUR family transcriptional regulator; Belongs to the Fur family.
       0.596
Ccel_1993
Hypothetical protein.
       0.592
Ccel_1996
Hypothetical protein.
       0.580
Ccel_1997
Small GTP-binding protein; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
       0.552
Ccel_1998
PFAM: FeoA family protein; KEGG: hmo:HM1_2506 ferrous iron uptake protein FeoA.
       0.480
Ccel_3194
KEGG: lwe:lwe0436 hypothetical protein.
  
     0.419
Ccel_3212
Protein of unknown function DUF204; Probably functions as a manganese efflux pump.
  
     0.401
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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