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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_1998PFAM: FeoA family protein; KEGG: hmo:HM1_2506 ferrous iron uptake protein FeoA. (73 aa)    
Predicted Functional Partners:
Ccel_1997
Small GTP-binding protein; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
 
  
 0.996
Ccel_1995
PFAM: ferric-uptake regulator; KEGG: cpf:CPF_2029 FUR family transcriptional regulator; Belongs to the Fur family.
     
 0.708
Ccel_1996
Hypothetical protein.
       0.630
Ccel_2169
KEGG: cth:Cthe_3163 carbohydrate-binding family 25 protein.
  
     0.526
Ccel_1999
KEGG: afl:Aflv_2769 uncharacterized protein contains CXXC motif.
       0.507
Ccel_1994
KEGG: aoe:Clos_0174 hypothetical protein.
       0.480
Ccel_2917
KEGG: sth:STH1943 hypothetical protein.
  
     0.435
Ccel_1940
PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; KEGG: cth:Cthe_1079 nucleotidyl transferase.
 
     0.433
Ccel_2085
KEGG: cth:Cthe_3174 hypothetical protein.
  
     0.416
Ccel_0348
PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; KEGG: cth:Cthe_1961 nucleotidyl transferase.
 
     0.411
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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