Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2014KEGG: cpy:Cphy_2209 hypothetical protein. (314 aa)    
Predicted Functional Partners:
Ccel_2016
Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: lmo:lmo2672 hypothetical protein.
 
     0.826
Ccel_2015
KEGG: cpy:Cphy_3137 hypothetical protein.
  
    0.678
Ccel_2345
KEGG: cpy:Cphy_2165 hypothetical protein.
  
     0.603
Ccel_2672
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cdf:CD1725 AraC family transcription regulator.
  
     0.570
Ccel_3377
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cpy:Cphy_2411 glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.556
Ccel_0029
Hypothetical protein; KEGG: hau:Haur_4114 multi-sensor signal transduction histidine kinase.
  
     0.514
Ccel_2027
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: cth:Cthe_0490 CheA signal transduction histidine kinases.
  
 
 0.489
Ccel_2315
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: cbe:Cbei_4829 CheA signal transduction histidine kinase.
  
 
 0.489
Ccel_0508
Hypothetical protein; KEGG: cth:Cthe_1835 viral A-type inclusion repeat-containing protein.
  
     0.480
Ccel_0588
PFAM: CheW domain protein; KEGG: cth:Cthe_0878 CheW protein.
   
 
 0.468
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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